PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.374330.2
Common NameCsa_5G135350, LOC101216110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 534aa    MW: 57769.1 Da    PI: 5.0644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.374330.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09350398355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Cucsa.374330.2 350 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 398
                     58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.95E-11345402No hitNo description
SuperFamilySSF474598.37E-17345416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16348415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6350398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MNGKDEFEVE NRTSDPMSIS SAWQFAAPNL TNESVGFDST GNPSVVSNGD LGVSSCPSTS  60
MSNLFTPALL NHHTESQNSG FCTTFNEQNS IVTSNTTLVD GEDLNSLRSN GDTRTLGMDW  120
NQQNPWMKGV FSGNVPGIFP PNLSQLPADS AFIERAARFS CFNNGVFGAP PAGPFGISDS  180
LGIHSGGGFR RQEVISRNGV SKDVSLPMEL EAEEKSPPKN EKDSEMSQDR AKQGCVGESG  240
NDSDEAGFSG GQDEQCTMGG TMTEPSTEGL CFKKRKRGEQ NVGLGQVKEA PQQINETAKN  300
GAFNQQKGGQ NPSSTTSKPA GKQGKQDSQP SDAPKEEYIH VRARRGQATN SHSLAERVRR  360
EKISERMRLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE  420
ELLTKEFIQS KAGPSLFGFP PDMPVPYLPQ HSSHHGLIPP CLPTMGSSPD LLRRAINSQL  480
TSLVGGFKEP VQLPNRWENE LHNVVPMNFD VSAPSSGQDV DGSNPQCNTR AEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149484.20.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A0A0KLP90.0A0A0A0KLP9_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s14600.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-90bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]